PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020491-PA
Common NameOsI_21249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 289aa    MW: 31608.2 Da    PI: 9.3719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020491-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12250455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  BGIOSGA020491-PA  2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                      89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-13154No hitNo description
SuperFamilySSF474599.55E-17174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-13267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRQQPQAHL ISPASISASG GGSPSPTPSP RSLITSCSPT AAAGSSAGSS SSISPKDENK  120
QQLQLVAELA ACCNSPMADV EARISGANVL LARSLGAPLP SGSSPFSRAS ISRCSISTSP  180
PWTTPSSTPS SSRSASTATS ASTTLPWRST SPSCRHLQPT PIITSIPSYL PTLICFFYIY  240
NSIVTSHDSS CMFHCFIYIY IYIYIYIYIY IYIYIYIYIY IYIYIFLLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638702.14e-83PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K64e-40MUTE_ARATH; Transcription factor MUTE
TrEMBLB8AXI50.0B8AXI5_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA020491-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.15e-31bHLH family protein